sequencing trace  

Indelligent v2.0.0

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base calls  

© 2026 Dmitry Dmitriev & Roman Rakitov

 

IUPAC codes

R = A or G
Y = C or T
K = G or T
M = A or C
S = C or G
W = A or T

B = not A
D = not C
H = not G
V = not T

N = any

The program reconstructs allelic sequences based on the pattern of calls within an individual convoluted DNA trace produced by direct sequencing of a diploid template containing heterozygous insertions/deletions.

Enter sequence to be analyzed in the window (click on the example: TKGKKSCMW) and press "Submit".

Not for use in diagnostic procedures.


Parameters

Max phase shift size, bp.: ?

Shift change penalty: ?

Fix shift(s), bp.: ?


Output view options

Align alleles: ?

Align floating indels:
Left Right ?

Display "long" indels: ?


Simulate indels ?